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SPRING 2004

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SPRING 2004


Friday, January 30, 2004

Topic: Observing Spatiotemporal Variability in Marine Chemistry


Speaker: Joseph Resing, search candidate
Sponsor: Chemistry and Biochemistry Department
Time: 12:00 - 1:00 pm
Place: Thornton Hall 327


Friday, February 6, 2004

Topic: A short circuit in the global C cycle? Transport of relict C from continents to the oceans


Speaker: Tomoko Komada, search candidate
Sponsor: Chemistry and Biochemistry Department
Time: 12:00 - 1:00 pm
Place: Thornton Hall 327


Thursday February 12, 2004

Topic: Characterization of avirulence genes from Xanthomonas oryzae pv. oryzae field isolates

Speaker: Dr. Grisel Ponciano, SFSU
Sponsor: SFSU Colloquium in Microbiology, Cell and Molecular Biology sponsored by MARC/RISE programs
Time: 4:10 PM
Place: SCI 210


Friday, February 13, 2004

Topic: Through the looking glass: a nanoscale view of marine organic geochemistry


Speaker: Jay Brandes, search candidate
Sponsor: Chemistry and Biochemistry Department
Time: 12:00 - 1:00 pm
Place: Thornton Hall 327


Wednesday, February 18, 2004

Topic: Fluvial-Deltaic Cyclicity in the Ridge Basin, Southern California:
Evidence for Kinematic Cyclostratigraphy

Speaker: Dr. Morgan Sullivan, Chico State University
Sponsor: Department of Geosciences Disinguished Speaker Series
Time: 1-2pm.
Place: Thornton Hall 618

 


Thursday February 19, 2004

Topic: Comparative genomic analysis of coding sequences between rice and Arabidopsis and among cereal crops

Speaker: Dr. Shibo Zhang, UC Berkeley
Sponsor: SFSU Colloquium in Microbiology, Cell and Molecular Biology sponsored by MARC/RISE programs
Time: 4:10 PM
Place: SCI 210


Monday February 23, 2004

Topic: LISA (Laser Interferometer Space Antenna)

Abstract: The Laser Interferometer Space Antenna (LISA) is a space-based gravitational wave detector in a triangular configuration with arm length of five million kilometers. It is scheduled for launch in 2012. LISA will detect gravitational waves in the frequency range of 0.1 mHz to 100 mHz with a strain sensitivity integrated over a year of up to 10-23 m/m and directional resolution of better than one degree. We discuss the detectable sources of gravitational radiation and the configuration of the experiment. A technology demonstration for LISA is scheduled for flight in 2007.

Speaker: Professor Sasha Buchman, Stanford University
Sponsor: Physics and Astronomy Department
Time: 4:00 pm - Refreshments at 3:45 p.m
Place: Thornton Hall 411


Wednesday, February 25, 2004

Topic: Poster Day Social Activities:
RTC scientists will display the posters they have presented at national and international conferences during the last year. There will be a potluck lunch and plenty of time for conversation.

Speaker: Charles Bacon, U.S. Geological Survey Volcano Hazards Team, Menlo Park, CA
Sponsor: Romberg Tiburon Center
Time: Noon-1pm.
Place: RTC Bay Conference Center, 3152 Paradise Drive,Tiburon, CA 94920
rtcinfo@sfsu.edu ï (415) 338-6063

Directions: Click here.

 


Wednesday, February 25, 2004

Topic: The Great Eruption of Mt. Mazama and Formation of Crater Lake Caldera
7,700 years ago in the Cascades

Speaker: Charles Bacon, U.S. Geological Survey Volcano Hazards Team, Menlo Park, CA
Sponsor: Department of Geosciences Disinguished Speaker Series
Time: 1-2pm.
Place: Thornton Hall 604

 


Thursday February 26, 2004

Topic: The distribution and evolution of duplications in the genomes of Arabidopsis thaliana and humans

Speaker: Liqing Zhang, University of Chicago
Sponsor: SFSU Colloquium in Microbiology, Cell and Molecular Biology sponsored by MARC/RISE programs
Time: 4:10 PM
Place: SCI 210


Friday, February 27, 2004

Topic: Promoting Transcription and Motility in Bacilli


Speaker: Leti Marquez-Magaña, Biology Dept., SFSU
Sponsor: Chemistry and Biochemistry Department
Time: 12:00 - 1:00 pm
Place: Thornton Hall 327


Monday March 1, 2004

Topic: Neutrino Masses

Abstract: In recent years the experimental evidences that the neutrinos have tiny masses are mounting. We review the data and describe the theoretical motivations for small neutrino masses. In particular, we show how neutrinos probe the physics at very small distances..

Speaker: Professor Yuval Grossman, Technion, SLAC and UCSC
Sponsor: Physics and Astronomy Department
Time: 4:00 pm - Refreshments at 3:45 p.m
Place: Thornton Hall 411


Thursday March 4, 2004

Topic: Rise and fall of gene families:
dynamics of their expansion and functional implications

Speaker: Shinhan Shiu, University of Chicago
Sponsor: SFSU Colloquium in Microbiology, Cell and Molecular Biology sponsored by MARC/RISE programs
Time: 4:10 PM
Place: SCI 210


Friday, March 5, 2004

Topic: Impact of SFSU's new general chemistry curriculum on student attitudes, performance, and retention


Speaker: Profs. Cliff Berkman, Jane DeWitt, Uschi Simonis, Ray Trautman and Jane Zeile, SFSU, and Dr. Alan Peterfreund, Peterfreund Associates, Amherst, MA
Sponsor: Chemistry and Biochemistry Department
Time: 12:00 - 1:00 pm
Place: Thornton Hall 327


Monday March 8, 2004

Topic: Have Exotic Baryon Resonances Been Discovered?

Abstract: The numerous established baryon states (excited states of protons and neutrons) are well understood as combinations of three valence quarks. Do there exist in nature baryon states that require more complex structures such as four quarks plus an antiquark? Before 2003 there was no evidence for such states, but, in the last year, several groups have claimed significant observations of resonant structure that, if correct, can only be interpreted as one or more exotic states. I shall briefly describe the new results, discuss how they may (or may not) relate to the wealth of older data, and indicate what further measurements may be desirable to compellingly establish that indeed an important new discovery has been made.

Speaker: Professor George Trilling, Lawrence Berkeley Lab
Sponsor: Physics and Astronomy Department
Time: 4:00 pm - Refreshments at 3:45 p.m
Place: Thornton Hall 411


Wednesday March 10, 2004

Topic: Remote Sensing Using Autonomous Unmanned Vehicles

Speaker: Mike Holden, Department ofMechanical Engineering, San Francisco State University
Sponsor: Romberg Tiburon Center Seminar Series
Time: Noon - 1 pm
Place: Bay Conference Center @ RTC 3152 Paradise Drive Tiburon, CA 94920
Directions here or rtcinfo@sfsu.edu (415) 338-6063

 


Friday, March 12, 2004

Topic: Gas Phase Reactions: Mass Spectrometric Tools for Studying Chemistry and Biochemistry


Speaker: Prof. Scott Gronert, SFSU
Sponsor: Chemistry and Biochemistry Department
Time: 12:00 - 1:00 pm
Place: Thornton Hall 327


Thursday March 18, 2004

Topic: Centrosomal dysfunction in breast cancer

Speaker: Kimberly McDermott, UCSF
Sponsor: SFSU Colloquium in Microbiology, Cell and Molecular Biology sponsored by MARC/RISE programs
Time: 4:10 PM
Place: SCI 210


Friday, March 19, 2004

Topic: Nutrient Photochemistry: Never Underestimate the Little Guy


Speaker: Professor Krishna Foster, Cal State LA
Sponsor: Chemistry and Biochemistry Department and host Ray Esquerra/RISE
Time: 12:00 - 1:00 pm
Place: Thornton Hall 327


Monday March 29, 2004

Topic: "The Hunt for Habitable Planets" and the Kepler mission

Abstract: It wasn't long ago that the roster of Solar System planets was filled - with Neptune (1846) and Pluto (1930) completing the list. Yet today more than 100 other planets are known to orbit the nearest stars. Growing at a rapid pace, this list of extra-solar planets is yielding important statistics on the characteristics of giant planets. And the not-so-distant future promises to bring similar statistics about the more elusive Earth-like planets as NASA continues to put its cutting-edge technology into space. The Kepler project is a NASA Discovery mission whose objective is to identify Earth-like planets orbiting sun-like stars. I will give an overview of the Kepler science objectives and discuss the progress of the mission over the last year - its first since selection.

Speaker: Dr. Natalie Batalha, San Jose State University
Sponsor: Physics and Astronomy Department
Time: 4:00 pm - Refreshments at 3:45 p.m
Place: Thornton Hall 411


Thursday April 1, 2004

Topic: Hedgehog Signaling in Development and Disease

Speaker: Matthew Scott, Stanford University
Sponsor: SFSU Colloquium in Microbiology, Cell and Molecular Biology sponsored by MARC/RISE programs
Time: 4:00 PM
Place: SCI 210


Friday, April 2, 2004

Topic: Structural determinants of activation state of orphan nuclear receptors of subfamily NR5a


Speaker: Dr. Irina Krylove, UCSF
Sponsor: Chemistry and Biochemistry Department
Time: 12:00 - 1:00 pm
Place: Thornton Hall 327

Monday April 5, 2004

Topic: State of the Universe Report

Speaker: Dr. Joel Primak, UC Santa Cruz
Sponsor: Physics and Astronomy Department
Time: 4:00 pm - Refreshments at 3:45 p.m
Place: Thornton Hall 411


Wednesday April 7, 2004

Topic: CenCOOS: The Central California Ocean Observing System

Speaker: Stephanie Watson, Coordinator, Central California Ocean Observing System (CenCOOS)
Sponsor: Romberg Tiburon Center Seminar Series
Time: Noon - 1 pm
Place: Bay Conference Center @ RTC 3152 Paradise Drive Tiburon, CA 94920
Directions here or rtcinfo@sfsu.edu (415) 338-6063

 


Thursday April 8, 2004

Topic: Genetic and Epigenetic Events in Early Cancer

Speaker: Dr. Thea Tlsty; Department of Pathology, UCSF
Sponsor: Department of Biology
Time: 4:00 PM
Place: SCI 210


Friday, April 9, 2004

Topic: Protein Modifications, Mass Spectrometry, and the Era of the Proteome


Speaker: Prof. Dan Jones, Penn State University
Sponsor: Chemistry and Biochemistry Department
Time: 12:00 - 1:00 pm
Place: Thornton Hall 327


Monday April 12, 2004

Topic: Modulation of calcium oxalate cristallization by proteins and small
molecules investigated by In Situ Atomic Force Microscopy

Speaker: Dr. Siping R. Qiu, Department of Chemistry and Materials Science
University of California, Lawrence Livermore National Laboratory

Sponsor: Physics and Astronomy Department
Time: 4:00 pm - Refreshments at 3:45 p.m
Place: Thornton Hall 411

Monday April 12, 2004

Topic: Fullerenes and Generalizations: Interplay between Geometry and Chemistry

Abstract
Since the discovery of molecule of C60 (truncated icosahedron), the fullerenes, i.e. simple polyhedra with only pentagonal and hexagonal faces, became the main object in Organic Chemistry; the synthesis of C60 was marked by the Nobel prize 1996. We present fullerenes from their origins (isoperimetric problem in M.Golgberg's paper 1933) till their modern use in Chemistry, Virology, Architecture etc. We review some generalizations and relatives of them, including:
1) analogues on surfaces;
2) icosahedral polyhedra with only pentagonal and m-gonal faces;
3) plane partitions with only pentagonal and hexagonal faces;
4) tetrahedral close packings of 3-space by four Frank-Kasper polyhedra (t.c.p. phases of metallic alloys).

 

It will be an expositary lecture on new connections of Discrete Geometry and Chemistry

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Speaker: Michel Deza, Ecole Normale Superieure, Paris, France
Sponsor: Mathematics Department
Time: 4:00-5:00 - (refreshments served in TH 935 at 3:30 PM)
Place: Thornton Hall 211

 


Thursday April 15, 2004

Topic: Targeted Medicine: The Future of Pharmacogenomics, Diagnostics and Therapeutics

Speaker: Dr. Michael C. Venuti; Sr. VP Pharmacogenomics, Celera Genomics
Sponsor: Department of Biology
Time: 4:00 PM
Place: SCI 210


Friday, April 16, 2004

Topic: Broad Spectrum Enzymology Towards Broad Spectrum Antibiotics


Speaker: Prof. Michael Toney, UC Davis
Sponsor: Chemistry and Biochemistry Department
Time: 12:00 - 1:00 pm
Place: Thornton Hall 327


Wednesday April 21, 2004

Topic: Limited effects of Antarctic Ozone Depletion on Sea Urchin Development

Speaker: Deneb Karentz, Department of Biology, University of San Francisco
Sponsor: Romberg Tiburon Center Seminar Series
Time: Noon - 1 pm
Place: Bay Conference Center @ RTC 3152 Paradise Drive Tiburon, CA 94920
Directions here or rtcinfo@sfsu.edu (415) 338-6063

Wednesday April 21, 2004

Topic: Certificates of Algebraic Positivity

Abstract
Positivity is a distinguishing property of the field of real numbers. Writing a polynomial as a sum of squares gives a certificate that it is positive. Hilbert showed that a positive homogeneous quartic polynomial in three variables (ternary quartic) is a sum of three squares of quadratic polynomials. He also showed tha there are positive polynomials of every higher degree or greater number of variables with no such sum of squares representations. This led to his 17th problem-to determine whether a positive polynomial is a sum of squares of rational functions. This was answered in the affirmative by Artin in 1926. Recently, positive polynomials have have undergone a revival. In the 1990's Lasserre realized that recent theoretical results from real algebraic geometry and semi-definite programming could be combined to give effective algorithms for solving a class of relaxations of hard optimization problems. The relaxation replaces positivity by sum of squares representation. I will briefly surey the history of positive polynomials and these modern applications, and then discuss a recent strengthening of Hilbert's Theorem on ternary quartics: a positive ternary quartic is a sum of squares in exactly 8 inequivalent ways.

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Speaker: Frank Sottile, Clay Mathematical Institute and the
Mathematical Sciences Research InstituteMSRI (Berkeley)

Sponsor: Mathematics Department
Time: 4:00-5:00 - (refreshments served in TH 935 at 3:30 PM)
Place: Thornton Hall 211

 


Thursday April 22, 2004

Topic: The Oncogenome TM: Cracking the code of Cancer

Speaker: David Ferrick, CEO, Sagres Discovery
Sponsor: SFSU Colloquium in Microbiology, Cell and Molecular Biology sponsored by MARC/RISE programs

Time: 4:10 PM
Place: SCI 210


Friday, April 23, 2004

Topic: Chemical Synthesis and Biological Studies of Natural Products


Speaker: Dr. Jim Li, Roche
Sponsor: Chemistry and Biochemistry Department
Time: 12:00 - 1:00 pm
Place: Thornton Hall 327


Monday April 26, 2004

Topic: Lattice QCD: where we are, how we got there, and where we're going

Abstract
Numerical simulations in Quantum Chromodynamics (QCD) on the lattice provide the only known method to compute many of the crucially needed nonperturbative quantities describing strongly interacting particles. Here, I present a somewhat idiosyncratic view of the history and current status of lattice QCD. I focus in particular on methods of simulating quarks on the lattice. I then describe some recent developments that are leading to much more accurate calculations than were possible in the past.

Speaker: Professor Claude Bernard, Washington University
Sponsor: Physics and Astronomy Department
Time: 4:00 pm - Refreshments at 3:45 p.m
Place: Thornton Hall 411


Friday, April 30, 2004

Topic: Professional Development of Teachers as Researchers:
Integrating Pedagogy and Content through Research in Chemistry Education


Speaker: Prof. Stacey Lowery Bretz, Youngstown State University
Sponsor: Chemistry and Biochemistry Department
Time: 12:00 - 1:00 pm
Place: Thornton Hall 327



Monday May 3, 2004

Topic: Historical Roots of Gauge Invariance

Abstract
A number of reviews of gauge theories cover the period from about 1929 (Weyl's major paper on the subject) to the present day, with stress on the post-Yang-Mills epoch. Lev Okun and I address the "pre-history" of the subject, starting with Ampere, Neumann, Weber, and others, and the debates over the "correct" form of the vector potential. The story continues with Maxwell, Lorenz, Helmholtz, Clausius, and Lorentz by which time the idea of different, equivalent gauges for the potentials in classical electromagnetism had been clarified completely. We then discuss the annus mirabilis, 1926, with Fock's discovery of the phase transformation of the wave function that must accompany a gauge change of the potentials. The unfair belittlement of the contributions of Lorenz and Fock are aired. Portraits of all the "electricians" are presented as the story unfolds

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Speaker: Professor J.D. Jackson, U.C. Berkeley and Lawrence Berkeley Lab
Sponsor: Physics and Astronomy Department
Time: 4:00 pm - Refreshments at 3:45 p.m
Place: Thornton Hall 411


Wednesday May 5, 2004

Topic: From Wind to Whales: Understanding Why Coastal California is so Productive

Speaker: Raphael Kudela, Ocean Sciences, University of California Santa Cruz
Sponsor: Romberg Tiburon Center Seminar Series
Time: Noon - 1 pm
Place: Bay Conference Center @ RTC 3152 Paradise Drive Tiburon, CA 94920
Directions here or rtcinfo@sfsu.edu (415) 338-6063

Wednesday May 5, 2004

Topic: Resultants in Genetic Linkage Analysis

Abstract
The field of Genetic Linkage Analysis, or gene mapping, is concerned with finding the chromosomal location of disease genes. Over 1200 disease genes have been successfully mapped, most of them for Mendelian (one gene) disorders. However, most common diseases are caused not by one but by many interacting genes and it has proved to be very hard to map the genes for these complex diseases. Much of the difficulty is due to the complex underlying biology, but it is also important to develop the statistical models used. The statistical models used in genetic linkage analysis of k-locus (gene) diseases are k-dimensional subvarieties of a (3^k-1)-dimensional probability simplex. We have determined the algebraic invariants of these models with general characteristics for k=1 and k=2, using the Bezout resultant.

Joint work with Bernd Sturmfels.

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Speaker: Ingileif B. Hallgrimsdottir (UC Berkeley, Department of Statistics)
Sponsor: Mathematics Department
Time: 4:00-5:00 - (refreshments served in TH 935 at 3:30 PM)
Place: Thornton Hall 211

 


Thursday May 6, 2004

Topic: Genetic and Epigenetic Events in Early Cancer

Speaker: Dr. Thea Tlsty; Department of Pathology, UCSF
Sponsor: Department of Biology
Time: 4:00 PM
Place: SCI 210


 

Friday, May 7, 2004

Topic: Flexibility in the Ligand Exchange Pathway in a Metal Ion Reductase -
Tradeoffs between access and delivery rates


Speaker: Prof. Susan Miller, UCSF
Sponsor: Chemistry and Biochemistry Department
Time: 12:00 - 1:00 pm
Place: Thornton Hall 327


Wednesday May 12, 2004

Topic: Rational Maps and Sierpinski Gaskets

Abstract: Sometimes the terms "fractal" and "Julia set" are used in a undistinguished manner to describe certain sets that arise from iterative methods in dynamical systems or topology. This is not always correct. Consider the Sierpinski gasket, which is a classical example of a fractal set (broadly speaking, is a self-similar set with a fractal dimension). Many are the methods to produce such set, some of them are topological in nature (as the iterative process of removing open middle equilateral triangles) and some are more dynamical (e.g. the "chaos game").

 

On the other hand, the Julia set of a map can be defined to be the closure of the set of points that under iteration exhibit an unpredictable behavior. For example, the Julia set of the map z\to z^2 is no other than the unit circle, since all other points either map toward infinity or toward the zero under iteration of the quadratic map. Clearly, the circle is a set of dimension one.

Then, not all Julia sets are fractals and not all fractals arise as Julia sets of some map. Well, not quite. In this talk we present two families of rational maps of degree three and four acting on the Riemann sphere. We will show that the Julia sets for many elements of these families are generalized Sierpinski gaskets and that one, and only one element in the degree three family has a Julia set homeomorphic to the Sierpinski gasket.

This talk is based on the paper "Rational Maps with Generalized Sierpinski Gasket Julia Sets'', written by R. L. Devaney, M. Moreno Rocha and S. Siegmund, 2004.

Speaker: Monica Moreno Rocha (Tufts University)
Sponsor: Mathematics Department
Time: 4:00-5:00 - (refreshments served in TH 935 at 3:30 PM)
Place: Thornton Hall 211


Thursday May 13, 2004

Topic: Melatonin Receptors: Signaling, Function And Regulation of Circadian Rhythms

Speaker: Dr. Margarita Dubocovich, Feinberg School of Medicine, Northwestern University
Sponsor: Department of Biology
Time: 4:00 PM
Place: SCI 210


Friday, May 14, 2004

Topic: Molecular Basis of Protein Deposition Diseases: Pesticides and Parkinson's Disease


Speaker: Prof. Tony Fink, UC Santa Cruz
Sponsor: Chemistry and Biochemistry Department
Time: 12:00 - 1:00 pm
Place: Thornton Hall 327


 


Wednesday May 19, 2004

Topic: Influences of Tidal Currents on the Ecology of Protists in Subtidal Coastal Sediments

Speaker: Jeff Shimeta, Biology Department, Franklin & Marshall College
Sponsor: Romberg Tiburon Center Seminar Series
Time: Noon - 1 pm
Place: Bay Conference Center @ RTC 3152 Paradise Drive Tiburon, CA 94920


Directions here or rtcinfo@sfsu.edu (415) 338-6063


Thursday May 20, 2004

Topic: Human Evolution: Differential Divergence from Our Closest Relative, the Chimpanzee

Speaker: Dr. John Sninsky, Vice President of Discovery Research, Celera Diagnostics
Sponsor: Department of Biology
Time: 4:00 PM
Place: SCI 210


 

 

 

 

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