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SPRING 2003

Wednesday January 29, 2003

Topic: A Counterexample to a Discrete Analogue of Caratheodory Theorem
Abstract: Arbitrary convex polytope is a union of simplices that are spanned by vertices of the polytope, equivalently - arbitrary finite polyhedral cone is a union of simplicial cones that are spanned by extremal rays of the original cone. This is Caratheodory's classical theorem proved almost a century ago. Surprisingly, the proof of a discrete analogue of this fact that takes care on the lattice points inside a polytope (or cone) has remained elusive until very recently. A combination of an arithmetic study and extensive explicit computations (with powerful computers during several months!) have eventually led the author, in collaboration with W. Bruns, to an aesthetic and, to some extent, unexpected couterexample in dimension 5.

Speaker: Joseph Gubeladze, Georgian Academy of Sciences
Sponsor: Mathematics Department
Time: 5:00-6:00 pm
Place: Thornton Hall 211


Monday February 3, 2003

Topic: First Results from the KamLAND Neutrino Experiment
Speaker: Dr. Yoshi Uchida, Postdoctoral Fellow, Stanford University
Sponsor: Physics and Astronomy Colloquium
Time: 4:00 pm
Place: Thornton Hall 411

Monday February 3, 2003

Topic: Motivic homotopy theory
Abstract: Recent work of Morel and Voevodsky makes it possible to apply the basic principles of algebraic topology to algebraic geometry. In essence, we can now study the homotopy theory of algebraic varieties. Such algebraic topological tools have been used to answer some fundamental questions in algebraic geometry. I'll give a leisurely introduction to this subject for the non-specialist and describe how my own work fits into the picture.

Speaker: Dan Isakson, Notre Dame (Indiana)
Sponsor: Mathematics Department
Time: 5:00-6:00 pm
Place: Thornton Hall 211


Friday February 7, 2003

Topic: Chemical Composition of Stars with Extrasolar Planets
Abstract: In the past seven years, more than 100 extrasolar planets have been discovered by Doppler surveys. The Doppler detection of an extrasolar planet requires velocity measurements over one full orbital period. A natural consequence of this requirement is that there is a gradual harvesting of planets from the closest to the widest orbital separations. Because gas giant planets are expected to form outside of a 3 AU radius, the discovery of Jovian mass planets in eccentric orbits closer than 1 AU prompted a cascade of theories on orbital migration. Implicit in the concept of orbital migration is the expectation that not all migrating planets and planetesimals will park in stable orbits; some gas-depleted material will fall into the star and mix in the convective zone, enriching the chemical composition of the host stars.

Thus, it was intriguing when the first planet-bearing stars were found to have solar, or higher, iron abundances. The correlation between chemical composition and the presence of extrasolar planets has persisted and has become the subject of increasing debate. At issue is the question of whether the metallicity correlation is primarily an initial condition that enhances the formation of planets, or a by-product from the accretion of planets. In this talk I will present results from spectral analysis of about 500 star on the Lick and Keck planet search surveys and discuss the surprising lack of evidence for an accretion signature in this data set.

Speaker: Dr. Debra Fischer, Research Astronomer, University of California, Berkeley
Sponsor: Physics and Astronomy Colloquium
Time: 4:00 pm
Place: Thornton Hall 411

Friday February 7, 2003

Topic: Integer-point enumeration in polytopes
Abstract: We use generating functions and complex-analytic methods to count integer (``lattice'') points in polytopes with rational vertices. More precisely, we study the number of lattice points as the polytope gets dilated by an integer factor. This expression is known as the Ehrhart quasipolynomial.

Because polytopes can be described by a system of linear equalities and inequalities, they appear in a wealth of areas. We will show applications of Ehrhart quasipolynomials to number theory (Dedekind sums), combinatorics (the `coin-exchange problem' of Frobenius), and computational geometry (the Birkhoff polytope of doubly stochastic matrices).

Speaker: Matthias Beck, Binghamton University (SUNY)
Sponsor: Mathematics Department
Time: 5:00-6:00 pm
Place: Thornton Hall 211


Monday February 10, 2003

Topic: Polynomial Inequalities
Abstract: The classical Bernstein inequality states that for a trigonometric polynomial p(t), the absolute value |p'(t)| of the derivative at any point is bounded above by the degree of p times the supremum norm of p (think, e.g., of p(t)=cos(nt), deg(p)=n). Since p can be considered as a polynomial q(x,y) of two real variables restricted to the unit circle S (x=cost, y=sint), this inequality can be interpreted as an estimate on the tangential derivative of q along S. We show, using elementary linear algebra and calculus, that such types of polynomial inequalities characterize those smooth curves C in the plane which, like S, are algebraic, i.e., C is contained in {(x,y): Q(x,y)=0} for some polynomial Q.

Speaker: Dr. Norman Levenberg, University of Auckland and Indiana University
Sponsor: Mathematics Department
Time: 5:00-6:00 pm
Place: Thornton Hall 211


Tuesday February 11, 2003

Topic: River Incision into Bedrock: Linking Tectonics, Climate and Topography

Speaker: Dr. Leonard Sklar, U.C. Berkeley, Department of Earth and Planetary Science
Candidate for the faculty position in engineering geology/surficial processes
Sponsor: Geosciences Department
Time: 1:00-2:00 pm
Place: Thornton Hall 604


Wednesday February 12, 2003

Topic: Spatial Statistics for Modeling Phytoplankton Levels
Abstract: Phytoplankton are important elements of lake and ocean ecosystems: they are the base of aquatic and oceanic food chains and may affect global climate through fixation of atmospheric carbon by photosynthesis. Statistical challenges associated with modeling phytoplankton biomass include calibration of indirect measurements, covariance model specification for anisotropic processes, combining different measurement methods, and computational limitations associated with large data sets. We present potential solutions to these problems that though developed with an eye to understanding phytoplankton dynamics are general enough to be relevant to many spatial and environmental problems.

Speaker: Dr. Norman Levenberg, University of Auckland and Indiana University
Sponsor: Mathematics Department
Time: 5:00-6:00 pm
Place: Thornton Hall 211

Wednesday February 12, 2003

Topic: Image Understanding & Web Security
Abstract: Internet services offered for human use are suffering abuse by programs ('bots, spiders, scrapers, spammers, etc). We mount a defense against such attacks with CAPTCHAs, `completely automatic public Turing tests to tell computers and humans apart;' these are special cases of `human interactive proofs' (HIPs), a class of security protocols allowing people easily to identify themselves over networks as members of given groups. I will review the five years of evolution of HIP R&D, highlights of the first NSF HIP workshop, and applications of HIPs now in use and on the horizon. One of the best ways to construct a CAPTCHA is to exploit the gap in ability between humans and machines in attempting to read images of text. I will describe two such reading-based CAPTCHAs, developed in collaborations between PARC and UC Berkeley:

PessimalPrint, motivated by studies of physics-based image degradations, uses images synthesized pseudo-randomly over certain ranges of words, typefaces, and image quality; and BaffleText, motivated by the psychophysics of human reading, uses image-masking degradations that seem to require Gestalt perception skills.

Both CAPTCHAs have been validated by experiments on human subjects and commercial OCR machines, and both have successfully resisted attack (so far) by advanced computer-vision techniques. I'll offer proposals for an image understanding research agenda to advance further the state of the art of web security.

[Joint work with Richard Fateman, Allison Coates, Kris Popat, Monica Chew, Tom Breuel, & Mark Luk.]

Speaker: Henry Baird, Palo Alto Research Center
Sponsor: PERNET Colloquium
Time: 5:30 pm
Place: Thornton Hall 331


Thursday February 13, 2003

Topic: GIS Applications to Earthquake-induced Landsliding

Speaker: Bijan Khazai, U.C. Berkeley Department of Civil and Environmental Engineering
Candidate for the faculty position in engineering geology/surficial processes
Sponsor: Geosciences Department
Time: 1:00-2:00 pm
Place: Thornton Hall 604

Thursday February 13, 2003

Topic: Molecular Mechanisms Coordinating Cell Growth and Cell Division

Speaker: Dr. Doug Kellogg, Assistant Professor, Molecular, Cellular, & Developmental Biology, UC Santa Cruz
Sponsor: Biology 871 Colloquium
Time: 4 to 5:15pm
Place: SCI 101


Friday February 14, 2003

Topic: Pre-Main-Sequence Dynamical Evolution
Abstract: The general outline of the evolutionary stages through which tenuous interstellar gas and dust passes in the process of forming an isolated, Sun-like star has been developed from both observations and theory over the past two decades. Nevertheless, much remains to be learned, with one outstanding mystery being the process of formation of binary or multiple stars. Current research results aimed at this problem will be presented and discussed.

Speaker: Dr. Mary Barsony, Visiting Research Scientist, Jet Propulsion Lab
Staff Scientist, Space Science Institute (Boulder, CO)
Sponsor: Physics and Astronomy Colloquium
Time: 4:00 pm
Place: Thornton Hall 411

Friday February 14, 2003

Topic: From Banach's Theorem to Rice's Formula
Abstract: The classical result of Banach states that variation of a function can be read from the number of its level crossings. In celebrated Rice's formula, the statistical average of the number of level crossings by a stochastic process in an interval is related to the mean value of the derivative of the process. We present the connection between these two results and provide with a generalized Rice formula for random fields. Using this generalization we derive some statistical properties of random sea waves.

Speaker: Krzysztof Podgorski, Indiana University. - Purdue University, Indianapolis
Sponsor: Mathematics Department
Time: 5:00-6:00 pm
Place: Thornton Hall 211



Thursday February 20, 2003

Topic: What are the Consequences of Aneuploidy? Tools for Measuring Phenotype and Manipulating the Genome in Yeast

Speaker: Dr. Kirk Anders, Department of Genetics, Stanford University
Sponsor: Biology 871 Colloquium
Time: 4:10 PM
Place: SCI 101


Friday February 17, 2003

Topic: Analysis of Microarrays: A Dimension Reduction Approach
Abstract: DNA microarray technology allows the measurement of thousands of gene expression values simultaneously, providing insight into the global gene expression patterns of cells being studied. In particular, the ability to monitor global expression profiles using microarrays has made it possible to investigate genome-wide objective approaches to molecular cancer classification. In this talk, I will discuss a prediction algorithm (rule) for microarray- based tumor classification using partial least squares dimension reduction. Within this context, I will discuss procedures to avoid gene (variable) selection bias when estimating the error rate of a tumor prediction rule.

Speaker: Dr. Norman Levenberg, University of Auckland and Indiana University
Sponsor: Mathematics Department
Time: 5:00-6:00 pm
Place: Thornton Hall 211


Thursday, February 20, 2003

Topic: ASTRO: Astrophysics Scholars in Teaching, Research, and Outreach
Abstract: Teaching and public outreach have always been important elements of an academic scientist's life. Today, there is an even greater demand for scientists who are skilled--and trained--not only in carrying out top-notch research, but also in teaching effectively and in conducting outreach for the public. Here I describe training opportunities in teaching and public outreach that I hope to bring to SFSU undergraduates and graduate students. I will discuss the ways in which these activities can (a) improve the public's understanding of and participation in science, and (b) enhance graduate-students' skills and competitiveness in the academic job market.

Speaker: Dr. Keivan Stassun, Hubble Fellow in Astronomy
University of Wisconsin
Sponsor: Physics and Astronomy Colloquium
Time: 4:00 P. M. - Refreshments at 3:45 P. M.
Place: Blakeslee Room (TH 1000)


Friday February 21, 2003

Topic: Fluoroaromatic Inhibitors of
Carbonic Anhydrase and Viral Neuraminidase

Speaker: Dr. Ahamindra Jain, UC Berkeley
Sponsor: Chemistry and Biochemistry Department
Time: 12:10 pm
Place: Thornton Hall 327

Friday February 21, 2003

Topic: Measuring the Masses and Angular Momenta of Newly Born Stars:
Understanding the Physics of How Stars Are Made

Abstract: The most fundamental property of a star is its mass, which dictates the course of its birth, life, and death. Of only slightly lower rank is a star's angular momentum, which influences internal structure, magnetic activity, and energy transport. Our current understanding of star formation is lacking with respect to both of these fundamental stellar properties. I describe a research program that aims to measure the masses and angular momenta of very young stars, and then use these measurements to test state-of-the-art star-formation theory.

Speaker: Dr. Keivan Stassun, Hubble Fellow in Astronomy
University of Wisconsin
Sponsor: Physics and Astronomy Colloquium
Time: 4:00 P. M. - Refreshments at 3:45 P. M.
Place: Blakeslee Room (TH 1000)


Monday February 24, 2003

Topic: Direct/Inverse Guided Acoustic Obstacle Scattering Problems
Abstract: Acoustic waves have been applied in long range detection and non-destructive analysis for a long time. For example, the sonar system on boats and the ultrasound equipment in medical institutes. When sound waves bounce to an object of size much bigger than the wavelength, scattering occurs. Measurement of the acoustic field can be used to approximate certain properties of the scatterer. In this talk, we will give an overview of time-harmonic acoustic scattering in a waveguide and its corresponding inverse problem in which the shape of the scatterer is the unknown. The mathematical formulation of both the direct and inverse guided acoustic scattering will be presented and some analytical and numerical tools will be introduced. Some of our recent results will also be presented in this talk.

Speaker: Dr. Miao-jung Yvonne Ou,
Institute for Mathematics and its Applications, University of Minnesota
Sponsor: Mathematics Department
Time: 5:00-6:00 pm
Place: Thornton Hall 211


Tuesday, February 25, 2003

Topic: Floodplain Processes: High and Low Energy Systems
in the Stream Power Continuum

Speaker: Dr. Joan Florsheim, University of California, Davis Geology Department
and Center for Integrated Watershed Science and Management

Candidate for the faculty position in engineering geology/surficial processes
Sponsor: Geoscience Speaker Series
Time: 1-2 pm
Place: Thornton Hall 604


Wednesday February 26, 2003

Topic: Poster Day Social
Abstract: To kick off the RTC Spring Seminar Series, please join us for a potluck lunch and social gathering. RTC scientist will share the research results that they have presented as posters at local, national, and international meetings over the last year.

Sponsor: Romberg Tiburon Center Seminar Series
Time: Noon - 1 pm
Place: Bay Conference Center @ RTC 3152 Paradise Drive Tiburon, CA 94920
Directions here or rtcinfo@sfsu.edu (415) 338-6063

Wednesday, February 26, 2003

Topic: DC-Train 4.0 Simulator and Trainer for Crisis Decision Making
Abstract: This talk presents the DC-Train 4.0 simulator and trainer for crisis decision making in the domain of ship damage control. DC-Train simulates a ship and the personnel on a ship, and allows a decision maker through an immerse interface to solve problems that involve fire, smoke, flooding, rupture and the like. The innovative feature of this project from a reasoning standpoint is its method of knowledge representation of the domain knowledge, which consists of Declarative Graph Modification Operators (DGMOs) composed of G-Clauses for representing static knowledge and a Causal Story Graph (CGG) for representing dynamic knowledge. This method of knowledge representation supports four very important and very diverse uses of the same knowledge. The knowledge can be inspected for correctness by domain experts, and it can be interpreted by a program to achieve the DC-Train expert model, the student critiquing model, and the tutoring model. A description will be given of ongoing extensions to DC-Train for spoken dialogue tutoring in conjunction with a Stanford-Illinois MURI Award. The DC-Train project received an AAAI/IAAI Deployed Innovative Application Award.


Speaker: David C. Wilkins, Beckman Institute
University of Illinois at Urbana-Champaign
Sponsor: PERNET Colloquium
Time: 5:30pm
Place: Thornton Hall 331


Thursday, February 27, 2003

Topic: A Proteomic Approach to Unraveling Tightly Compacted Worm Sperm Chromatin

Speaker: Dr. Diana Chu, Molecular and Cell Biology Department
UC Berkeley
Sponsor: Microbiology and Cell and Molecular Biology Colloquium
Time: 4:10pm - Refreshments at 4pm
Place: SCI 101


Friday February 28, 2003

Topic: TBA

Speaker: Dr. Martin Venderlaan, Genentech
Sponsor: Chemistry and Biochemistry Department
Time: 12:10 pm
Place: Thornton Hall 327



Monday March 3, 2003

Topic: Infall and Rotation around Young Stars:
Formation and Evolution of Protoplanetary Disks

Abstract: "Stars form when dense interstellar clouds collapse under the influence of their own gravity. The angular momentum present in the original cloud is carried inward as the star forms, and gives rise to a flattened structure that develops into a circumstellar disk. Such disks are widely held to be the progenitors of planetary systems. I will present observations of the amount and distribution of angular momentum in dense clouds, in collapsing cores around young stars, and in circumstellar disks. In particular I will address the question how angular momentum is transferred in viscous accretion disks, enabling continued infall. This is spurred by detailed observations of the young stellar object L1489 IRS, which is surrounded by an unusually large disk which shows both rotation and inflowing motions on all scales. This object poses the question: "What physical processes determine the final mass and size --- and planet-forming potential ---of circumstellar disks?"

Speaker: Dr. Michiel Hogerheijde, Steward Observatory
The University of Arizona
Sponsor: Physics and Astronomy Colloquium
Time: 4:00 P. M. - Refreshments at 3:45 P. M.
Place: Blakeslee Room (TH 1000)


Tuesday, March 4 , 2003

Topic: A Probabilistic Approach to
Spatially Distributed Landslide Hazard Modeling

Speaker: Dr. William Haneberg, Consultant
Haneberg Geoscience, Port Orchard, Washington
Sponsor: Geoscience Speaker Series
Time: 1-2 pm
Place: Thornton Hall 604



Wednesday March 5, 2003

Topic: An Analysis of the CPY2K Benchmarks
on the Intel Itanium 2 Processor

Abstract: The Itanium 2 processor is the second processor in the Itanium Processor Family and provides approximately twice the performance of the original Itanium processor. While this is not unusual for a subsequent generation processor to get such a big improvement, this is unusual when both chips are produced on the same process generation and have approximately the same die size. HP has reported that their Itanium 2 server achieves a score of 810 on SPECintbase_2000 --- higher thanany 0.18u micron processor on the SPEC website (as of July 9). To help explain how it achieves its excellent performance (810 int/1356 FP), we analyze how different compilers use the Itanium architecture features and specific characteristics of the Itanium 2 processor microarchitecture.

In the first part of talk, we will show how the Intel and HP compilers make use of Itanium architecture features to optimize application performance. We include detailed data regarding instruction set mixes, branch prediction and predication, software pipelining, control and data speculation, and the register stack engine. The analysis provides data from both the Intel and HP Itanium-based compilers and shows that both compilers find instruction level parallelism of nearly 3 instructions per clock. The results show that predication, speculation, and the register stack combined provide substantial benefits. The results also show that independently developed compiler technology achieves good results and that substantial value can be added based on OS policies and implementation.

In the second part of the talk, we examine detailed behavior of the Itanium 2 processor's execution resources, fetch bandwidth, and cache hierarchy to explain some of the benefits and trade-offs made during the Itanium 2 development. This analysis provides detailed breakdowns to show where time is being spent, what are the limiting factors in performance, and how the microarchitecture has been optimized for performance across a wide variety of applications (integer, floating-point, security, commercial).

All of the data was gathered on real hardware using the Itanium 2's performance monitoring hardware under HP-UX and early versions of Microsoft's 64-bit OS. [Note: this presentation was originally co-authored and presented with James McCormick at HP]

Speaker: Allan Knies, Intel COrporation
Sponsor: PERNET Colloquium
Time: 5:30 pm
Place: Thornton Hall 331


Thursday March 6, 2003

Topic: Genetic and Cell Biological Analysis of the
Life Cycle of the Fungus Ustilago maydis

Speaker: Dr. Flora Banuett, Associate Professor
Biological Sciences, CSU Long Beach
Sponsor: Biology 871 Colloquium
Time: 4:10pm - refreshments at 4pm
Place: SCI 101


Friday March 7, 2003

Topic: Elucidating the Mechanism of Transport Vesicle Formation

Speaker: Dr. David Madden, UC Berkeley
Sponsor: Chemistry and Biochemistry Department
Time: 12:10 pm
Place: Thornton Hall 327

Friday March 7, 2003

Topic: Missing Photons that Count:
Galaxy Evolution via Absorbing Gas

Abstract: Absorption lines in quasar spectra provide an astonishing array of detailed physical information at unrivaled sensitivities and over the full range of observable redshifts. Using the "missing light", the kinematic, ionization, and chemical conditions of galactic gas can be decoded from the time of the first quasars (employed as distant light beacons whose light paths provide "core samples" of the universe). More generally, evolution of absorption lines can be exploited for inferring evolution in galactic supernovae energetics and galactic superwinds. Moreover, absorption lines provide the only unbiased source of observational data required for us to glean insights into the cosmic evolutionary epochs when galaxies transition (i) from formation/build-up due to IGM and proto-galactic clump accretion (ii) to actively reprocessing gas into stars, (iii) to eventually decoupling from the IGM to enter a final "passive evolution" stage.

Speaker: Dr. Christopher Churchill
Research Associate and Graduate Faculty Member
Pennsylvania State University
Sponsor: Physics and Astronomy Colloquium
Time: 4:00 P. M. - Refreshments at 3:45 P. M.
Place: Blakeslee Room (TH 1000)


Monday, March 10, 2003

Topic: Function and Regulation of Floral Homeotic Genes in Arabidopsis

Speaker: Dr. Rebecca Lamb, Postdoctoral Scholar,
Department of Molecular, Cellular, and Developmental Biology, Yale University
Sponsor: Biology Department
Time: 12:10pm - refreshments at noon
Place: BUS 120


Wednesday March 12, 2003

Topic: The Role of Seed Dispersal in the Dynamics of Plants within Terrestrial Communities

Speaker: Dr. Tom Parker, San Francisco State University
Sponsor: Romberg Tiburon Center Seminar Series
Time: Noon - 1 pm
Place: Bay Conference Center @ RTC 3152 Paradise Drive Tiburon, CA 94920
Directions here or rtcinfo@sfsu.edu (415) 338-6063


Thursday, March 13

Topic: Life and Death in
Tropical American Neogene Oceans

Speaker: Dr. Peter D. Roopnarine, Asst. Curator
Department of Invertebrate Zoology & Geology
California Academy of Sciences

Sponsor: Geosciences Department Distinguished Speaker Series
Time: 12:30 - 1:30pm
Place: Thornton Hall 618

Thursday, March 13, 2003

Topic: Mechanisms of Morphogen Gradient Formation
during Drosophila Embryonic Development

Speaker: Dr. Felipe-AndrŽs Ram’rez-Weber, Assistant Professor
Department of Biological Science, CSU Fullerton
Sponsor: Department of Biology Colloquium
Time: 4:10pm - refreshments at 4pm
Place: SCI 101


Wednesday March 26, 2003

Topic: Unraveling the Selenium story of the San Francisco/Delta Ecosystem:
What have we learned from (un)stable isotopes?

Speaker: Dr. Robin Stewart, US Geological Survey
Sponsor: Romberg Tiburon Center Seminar Series
Time: Noon - 1 pm
Place: Bay Conference Center @ RTC 3152 Paradise Drive Tiburon, CA 94920
Directions here or rtcinfo@sfsu.edu (415) 338-6063

Wednesday March 26, 2003

Topic: Digital Library Information Appliances
Abstract: Documents created, stored, and retrieved digitally are often printed on paper to be read for the purposes of producing new documents. The cycle of electronic document "consumption" and production is often broken in the middle by printing. Our research in XLibris has examined these transitions between the digital and paper worlds. Starting with interfaces for analytic reading, we have focused on annotation, on retrieval and re-retrieval, and on shared annotation. In this talk, I will describe the interfaces and the empirical evaluations we have conducted, and will discuss the potential of this technology in digital - and in physical - libraries.

Speaker: Gene Golovchinsky, FX Palo Alto Laboratory
Sponsor: PERNET Colloquium
Time: 5:30 pm
Place: Thornton Hall 331


Thursday, March 27, 2003

Topic: Monterey Canyon: A Dynamic Submarine Conduit

Speaker: Dr. Gary Greene, Professor, Moss Landing Marine Labs
Monterey Bay Aquarium Research Institute
Sponsor: Geoscience Distinguished Speaker Series
Time: 12:30 - 1:30pm
Place: Thornton Hall 618

Thursday March 27, 2003

Topic: Developing a New Therapeutic Approach for Alzheimer's Disease

Speaker: Dr. Dora Games, Elan Pharmaceuticals, Inc.
Sponsor: Biology 871 Colloquium
Time: 4:10 PM - refreshments at 4pm
Place: SCI 101


Wednesday April 2, 2003

Topic: A Perceptually Based Audio Signal Model
with Application to Audio Transformations

Abstract: Time and frequency are inherently coupled. Speedup the playback of a recording (time-domain) and the perceived pitch of the music will be higher than the original (frequency-domain). For many applications, changing time without changing frequency and vice versa is desirable. The focus of this talk will be on a perceptually relevant signal model that allows the decoupling of time and frequency. Augmenting the model parameters provides a means for a wide range of musically interesting transformations when regenerating the signal.The model assumes audio signals are composed of three basic components: sinusoids, transients, and noise. In addition to the signal processing methods to extract these parameters in a perceptually meaningful way, the history of such models and sound examples of various transformations will be presented.

Speaker: Tony Verma, Vidiator Technology
Sponsor: PERNET Colloquium
Time: 5:30 pm
Place: Thornton Hall 331


Thursday, Apr 3, 2003

Topic: Tube or not Tube:
Remodeling Epithelial Tissues by Branching morphogenesis

Speaker: Dr. Zena Werb, Professor, Department of Anatomy
UC San Francisco
Sponsor: Biology 871 Colloquium
Time: 4:10 PM - refreshments at 4pm
Place: SCI 101


Monday April 7, 2003

Topic: Imaging the Early Universe with ACBAR
Abstract: Primary anisotropies of the Cosmic Microwave Background (CMB) encode a wealth of information about the early Universe. Recent degree-scale experiments have begun to exploit the potential of the CMB as a precision probe of cosmology with encouraging results. High-resolution images of the CMB can be used to provide improved constraints on cosmological parameters and study the growth of structure in the Universe. The Arcminute Cosmology Bolometer Array Receiver (ACBAR) is a powerful new instrument designed to image the CMB with resolution of 5 arcminutes. ACBAR was deployed to the South Pole in December 2000, and has recently produced the most sensitive images of the CMB of any experiment to date. I will discuss the construction and operation of the receiver, and present the key results from the first two years of observations.

Speaker: Dr. William Holzapfel, Associate Professor of Physics
Univ. of California, Berkeley
Sponsor: Physics and Astronomy Colloquium
Time: 4:00 pm
Place: Thornton Hall 411


Tuesday April 8, 2003

Topic: SPECIAL SEMINAR:
Penguins Meet Mega-Icebergs

Abstract: Dr. Ainley was the Director of Marine Studies at the Point Reyes for 18 years and has developed a penguin research program that spans over 20 years.

Dr. Ainley is one of the world's leading authorities on penguin biology and ecology. If you are interested in how those giant icebergs (the size of Rhode Island) are affecting penguins and the ecosystem in general in the Ross Sea region of Antarctica, then you will not want to miss this talk.

Speaker: Dr. Dave Ainley
Sponsor: Romberg Tiburon Center Seminar Series
Time: Noon
Place: Administration Bldg, 1st Floor Classroom
@ RTC 3152 Paradise Drive Tiburon, CA 94920
Directions here or rtcinfo@sfsu.edu (415) 338-6063


Wednesday April 9, 2003

Topic: TBA

Speaker: Dr. Jon Burau, US Geological Survey
Sponsor: Romberg Tiburon Center Seminar Series
Time: Noon - 1 pm
Place: Bay Conference Center @ RTC 3152 Paradise Drive Tiburon, CA 94920
Directions here or rtcinfo@sfsu.edu (415) 338-6063

Wednesday April 9, 2003

Topic: Come Hell or High Water?
The Case for Floodplain Restoration in the Central Valley

Speaker: Ted Sommer, California Dept. of Water Resources
Sponsor: Romberg Tiburon Center Seminar Series
Time: Noon - 1 pm
Place: Bay Conference Center @ RTC 3152 Paradise Drive Tiburon, CA 94920
Directions here or rtcinfo@sfsu.edu (415) 338-6063

Wednesday April 9, 2003

Topic: The Computation of Shrek
Abstract: The talk will discuss the computational challenges and approaches of animated feature film production on the example of "Shrek". First, an overview of the feature animation production pipeline will be given. Then the rendering complexity, algorithms, and implementation will be discussed in more detail. Finally we will talk a bit about the specific use of Linux. The talk will touch on topics like artistic development, computer graphics, complexity, processing power, networking, renderfarms, Linux, software development tools, and OpenSourcing.

Speaker: Karl Johann Schmidt, PDI/DreamWorks
Sponsor: PERNET Colloquium
Time: 5:30 pm
Place: Thornton Hall 331


Thursday, April 10, 2003

Topic: Tephrachronologic Evidence for Long-Term Displacement of the
East San Andreas Fault System in
the Northern San Francisco Bay Area

Speaker: Andre M. Sarna-Wojcicki, Head of Tephrachronology Lab
U.S.G .S. Menlo Park, CA
Sponsor: Geoscience Distinguished Speaker Series
Time: 12:30 - 1:30pm
Place: Thornton Hall 618


Thursday, Apr 10, 2003

Topic: Immunologic Control of HIV Infection Morphogenesis

Speaker: Dr. Jay Levy, Professor, Department of Medicine
and Research Associate, Cancer Research Institute, UCSF Sponsor: Biology 871 Colloquium
Time: 4:10 PM - refreshments at 4pm
Place: SCI 101

The Sunyaev-Zel'dovich (SZ) effect is the inverse-Compton scattering of Cosmic Microwave Background (CMB) photons by the hot gas in the potential wells of galaxy clusters. Measurements of the spectrum of the SZ effect allow the peculiar velocity of a cluster, relative to the Hubble expansion, to be measured. Peculiar velocities are sensitive to the distribution of dark matter in the universe and can be used to map out the gravitational potential on large scales, and to directly measure the matter density. The SZ effect can also be used to measure the temperature of the CMB as a function of redshift, and to determine the angular diameter distance-redshift relation and thus to probe dark energy. I will review measurements of the SZ spectrum that are being made with SuZIE (the Sunyaev-Zel'dovich Infrared Experiment) and discuss future prospects in this field.


Thursday, April 17, 2003

Topic: California Tectonics:
The Laramide and Andean Orogenies

Speaker: Eldridge Moores, Professor of Geology
U.C. Davis
Sponsor: Geoscience Distinguished Speaker Series
Time: 12:30 - 1:30pm
Place: Thornton Hall 618

Thursday, April 17, 2003

Topic: Morphogenetic Potential of Muscle Progenitor Cells in Chick Embryos

Speaker: Dr. Sara Venters, Postdoctoral Scholar
Department of Anatomy, UC San Francisco
Sponsor: Biology 871 Colloquium
Time: 4:10 PM - refreshments at 4pm
Place: SCI 101



Monday April 21, 2003

Topic: Analytical Applications of Jet-REMPI
Abstract: Jet-REMPI is an approach that combines a supersonic jet inlet (for cooling), a resonant laser photoionization scheme, and a time of flight mass spectrometer. A sample compound can be identified by both its rovibrational spectral signature and its mass, providing high selectivity. Additionally the photoionization scheme is orders of magnitude more efficient than conventional electron beam ionization, so that the method is highly sensitive. Jet-REMPI has been used for 30 years for spectroscopic and molecular dynamics research, but only recently has it been developed as an analytical tool. The excellent combination of selectivity and sensitivity make it very useful for this purpose. At SRI, we have concentrated on the use of Jet-REMPI in trace species analysis. Past and current applications include measurement of: dioxins, explosives, hazardous air pollutants, toxics in fuel exhaust, a cancer drug, and compounds in the breath for disease diagnosis.

Speaker: Dr. David R. Crosley, Molecular Physics Laboratory
SRI International, Menlo Park, California
Sponsor: Physics and Astronomy Colloquium
Time: 4:00 pm
Place: Thornton Hall 411


Wednesday April 23, 2003

Topic: Who Overgrazes What, Where, and Why:
What benthic grazers tell us about how the ecosystem works

Speaker: Jan Thompson, US Geological Survey
Sponsor: Romberg Tiburon Center Seminar Series
Time: Noon - 1 pm
Place: Bay Conference Center @ RTC 3152 Paradise Drive Tiburon, CA 94920
Directions here or rtcinfo@sfsu.edu (415) 338-6063


Thursday, April 24, 2003

Topic: Fragile X: Two Disorders, One Gene

Speaker: Dr. Randi Hagerman, Tsakopoulos-Vismara Professor of Pediatrics
and Medical Director, MIND Institute, UC Davis
Sponsor: Biology 871 Colloquium
Time: 4:10 PM - refreshments at 4pm
Place: SCI 101


Thursday, April 24, 2003

Topic: Disarticulating Faults and Crustal Strain Hardening in Southern Death Valley

Speaker: Matt McMackin, Professor of Geology
San Jose State University
Sponsor: Geoscience Distinguished Speaker Series
Time: 12:30 - 1:30pm
Place: Thornton Hall 618


Monday April 28, 2003

Topic: Coronae of the Sun and Stars
Abstract: Observations of X-ray and extreme ultraviolet emission from space are crucial in our understanding of the structure, evolution, and variability of coronae on the Sun and "cool" stars. Over the past two decades, imaging telescopes on Yohkoh, SOHO, and TRACE have provided dramatic evidence for the dynamic nature of solar activity. In parallel, our understanding of stellar magnetic activity has rapidly increased as a result of imaging and spectroscopic observations of single stars and stellar clusters from Einstein, ROSAT, EUVE, and more recently Chandra and XMM. In this talk, I will discuss some key observations which have shaped our current picture of solar and stellar coronae; important questions which are still unresolved; and, if time permits, how recent technological advances will drive future space missions in this area of astrophysical research.

Speaker: Dr. Robert Stern
Lockheed Martin Solar and Astrophysics Lab. Palo Alto, CA
Sponsor: Physics and Astronomy Colloquium
Time: 4:00 pm
Place: Thornton Hall 411


Thursday, May 1, 2003

Topic: Swimming in the Stomach: How Helicobacter pylori uses Motility During Infection

Speaker: Dr. Karen Ottemann, Assistant Professor
Department of Environmental Toxicology, UC Santa Cruz
Sponsor: Biology 871 Colloquium
Time: 4:10 PM - refreshments at 4pm
Place: SCI 101


Friday, May 2, 2003

Topic: Special Colloquium
Laboratory Studies Relevant to the Terrestrial and Planetary Atmospheres

Abstract: In the atmospheres of the Earth and Venus, oxygen atoms are generated by the photodissociation of O2 and CO2, respectively.Ê The three-body recombination of these oxygen atoms results in the formation of a multitude of electronically and internally excited states of O2.ÊOn Earth, emission from these electronic states exhibits a peak at approximately 100 km and is part of the naturally occurring chemiluminescence of the atmosphere called nightglow.ÊSince all the low-lying states of molecular oxygen are metastable, their radiative lifetimes are long enough that, even at very high altitudes, collisions play a dominant role in determining the fate of these excited states.ÊAn understanding of the energy transfer rate constants and pathways is critical for elucidating the details of these atmospherically important phenomena and for developing the ability to model them. Our laboratory has developed experimental methods to study collisional processes involving electronically excited O2 molecules under temperature conditions relevant to the upper atmosphere.

Dr. Konstantinos S. Kalogerakis, Research Chemical Physicist
Molecular Physics Laboratory, SRI International, Menlo Park, CA
Sponsor: Physics and Astronomy Colloquium
Time: 4:00 pm
Place: Thornton Hall 411


Monday May 5, 2003

Topic: Evidence from Type Ia Supernovae for an Accelerating Universe and Dark Energy
Abstract: The measured distances of type Ia (hydrogen-deficient) supernovae as a function of redshift (z) have shown that the expansion of the Universe is currently accelerating, probably due to the presence of repulsive dark energy (X) such as Einstein's cosmological constant (Lambda). Combining our data with existing measurements of the cosmic microwave background radiation and with the results of large-scale structure surveys, we find a best fit for Omega_M and Omega_X of about 0.3 and 0.7, respectively. Other studies (e.g., masses of clusters of galaxies) suggest that the matter density Omega_M = 0.3. The sum of the densities, 1.0, agrees with the value predicted by most inflationary models for the early Universe: the Universe is flat on large scales.ÊA number of possible systematic effects (dust, supernova evolution) thus far don't seem to eliminate the need for Omega_X > 0. Most recently, analyses of supernovae at z = 1.0-1.7 provide further support for acceleration. We are now in the process of measuring 200 supernovae with z = 0.2-0.8, to determine the equation of state of the dark energy, w_X = P/(rho c^2).

Dr. Alex Filippenko, Professor of Astronomy
University of California, Berkeley
Sponsor: Physics and Astronomy Colloquium
Time: 4:00 pm
Place: Thornton Hall 411


Monday May 12, 2003

Topic: The Dark Side of the Universe
Abstract: Most of the universe is in the form of dark matter and dark energy. I will describe both recent progress and unsolved mysteries in understanding these intriguing components.

Speaker: Dr. Chung-Pei Ma, Associate Professor of Astronomy
University of California, Berkeley
Sponsor: Physics and Astronomy Colloquium
Time: 4:00 pm
Place: Thornton Hall 411


Thursday, May 15, 2003

Topic: Regulation of Chromosome Replication inS. cerevisiae

Speaker: Dr. Oscar Aparicio, Assistant Professor of Molecular Biology
Department of Biology, and Norris Comprehensive Cancer Center
School of Medicine, University of Southern California
Sponsor: Biology 871 Colloquium
Time: 4:10 PM - refreshments at 4pm
Place: SCI 101


Thursday, May 22, 2003

Topic: RNA Interference: A New Frontier in Vaccinology

Speaker: Dr. Omar Bagasra, Director
South Carolina Biotechnology Center
Sponsor: Biology 871 Colloquium
Time: 4:10 PM - refreshments at 4pm
Place: SCI 101

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