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SPRING
2003
Wednesday
January 29, 2003
Topic: A Counterexample to a Discrete Analogue of Caratheodory Theorem
Abstract: Arbitrary convex polytope is a union of simplices that are
spanned by vertices of the polytope, equivalently - arbitrary finite
polyhedral cone is a union of simplicial cones that are spanned by
extremal rays of the original cone. This is Caratheodory's classical
theorem proved almost a century ago. Surprisingly, the proof of a
discrete analogue of this fact that takes care on the lattice points
inside a polytope (or cone) has remained elusive until very recently. A combination of an arithmetic study and extensive explicit computations (with powerful computers during several months!) have eventually led the author, in collaboration with W. Bruns, to an aesthetic and, to some extent, unexpected couterexample in dimension 5.
Speaker: Joseph Gubeladze, Georgian Academy of Sciences
Sponsor: Mathematics Department
Time: 5:00-6:00 pm
Place: Thornton Hall 211
Monday February 3, 2003
Topic: First Results from the KamLAND
Neutrino Experiment
Speaker: Dr. Yoshi Uchida, Postdoctoral Fellow, Stanford University
Sponsor: Physics and Astronomy Colloquium
Time: 4:00 pm
Place: Thornton Hall 411
Monday February 3, 2003
Topic: Motivic homotopy theory
Abstract: Recent work of Morel and Voevodsky makes it possible to apply
the basic principles of algebraic topology to algebraic geometry. In essence,
we can now study the homotopy theory of algebraic varieties. Such algebraic
topological tools have been used to answer some fundamental questions
in algebraic geometry. I'll give a leisurely introduction to this subject
for the non-specialist and describe how my own work fits into the picture.
Speaker: Dan Isakson, Notre Dame (Indiana)
Sponsor: Mathematics Department
Time: 5:00-6:00 pm
Place: Thornton Hall 211
Friday February 7, 2003
Topic: Chemical Composition of Stars
with Extrasolar Planets
Abstract: In the past seven years, more than 100 extrasolar planets have
been discovered by Doppler surveys. The Doppler detection of an extrasolar
planet requires velocity measurements over one full orbital period. A
natural consequence of this requirement is that there is a gradual harvesting
of planets from the closest to the widest orbital separations. Because
gas giant planets are expected to form outside of a 3 AU radius, the discovery
of Jovian mass planets in eccentric orbits closer than 1 AU prompted a
cascade of theories on orbital migration. Implicit in the concept of orbital
migration is the expectation that not all migrating planets and planetesimals
will park in stable orbits; some gas-depleted material will fall into
the star and mix in the convective zone, enriching the chemical composition
of the host stars.
Thus, it was intriguing when the first planet-bearing stars were found
to have solar, or higher, iron abundances. The correlation between chemical
composition and the presence of extrasolar planets has persisted and
has become the subject of increasing debate. At issue is the question
of whether the metallicity correlation is primarily an initial condition
that enhances the formation of planets, or a by-product from the accretion
of planets. In this talk I will present results from spectral analysis
of about 500 star on the Lick and Keck planet search surveys and discuss
the surprising lack of evidence for an accretion signature in this data
set.
Speaker: Dr. Debra Fischer, Research Astronomer, University of California,
Berkeley
Sponsor: Physics and Astronomy Colloquium
Time: 4:00 pm
Place: Thornton Hall 411
Friday February 7, 2003
Topic: Integer-point enumeration in
polytopes
Abstract: We use generating functions and complex-analytic methods to
count integer (``lattice'') points in polytopes with rational vertices.
More precisely, we study the number of lattice points as the polytope
gets dilated by an integer factor. This expression is known as the Ehrhart
quasipolynomial.
Because polytopes can be described by a system of linear equalities
and inequalities, they appear in a wealth of areas. We will show applications
of Ehrhart quasipolynomials to number theory (Dedekind sums), combinatorics
(the `coin-exchange problem' of Frobenius), and computational geometry
(the Birkhoff polytope of doubly stochastic matrices).
Speaker: Matthias Beck, Binghamton University (SUNY)
Sponsor: Mathematics Department
Time: 5:00-6:00 pm
Place: Thornton Hall 211
Monday February 10, 2003
Topic: Polynomial Inequalities
Abstract: The classical Bernstein inequality states that for a trigonometric
polynomial p(t), the absolute value |p'(t)| of the derivative at any point
is bounded above by the degree of p times the supremum norm of p (think,
e.g., of p(t)=cos(nt), deg(p)=n). Since p can be considered as a polynomial
q(x,y) of two real variables restricted to the unit circle S (x=cost,
y=sint), this inequality can be interpreted as an estimate on the tangential
derivative of q along S. We show, using elementary linear algebra and
calculus, that such types of polynomial inequalities characterize those
smooth curves C in the plane which, like S, are algebraic, i.e., C is
contained in {(x,y): Q(x,y)=0} for some polynomial Q.
Speaker: Dr. Norman Levenberg, University of Auckland and Indiana
University
Sponsor: Mathematics Department
Time: 5:00-6:00 pm
Place: Thornton Hall 211
Tuesday February 11, 2003
Topic: River Incision into Bedrock:
Linking Tectonics, Climate and Topography
Speaker: Dr. Leonard Sklar, U.C. Berkeley, Department of Earth and
Planetary Science
Candidate for the faculty position in engineering geology/surficial
processes
Sponsor: Geosciences Department
Time: 1:00-2:00 pm
Place: Thornton Hall 604
Wednesday February 12, 2003
Topic: Spatial Statistics for Modeling
Phytoplankton Levels
Abstract: Phytoplankton are important elements of lake and ocean ecosystems:
they are the base of aquatic and oceanic food chains and may affect global
climate through fixation of atmospheric carbon by photosynthesis. Statistical
challenges associated with modeling phytoplankton biomass include calibration
of indirect measurements, covariance model specification for anisotropic
processes, combining different measurement methods, and computational
limitations associated with large data sets. We present potential solutions
to these problems that though developed with an eye to understanding phytoplankton
dynamics are general enough to be relevant to many spatial and environmental
problems.
Speaker: Dr. Norman Levenberg, University of Auckland and Indiana
University
Sponsor: Mathematics Department
Time: 5:00-6:00 pm
Place: Thornton Hall 211
Wednesday February 12, 2003
Topic: Image Understanding & Web Security
Abstract: Internet services offered for human use are suffering abuse by programs ('bots, spiders, scrapers, spammers, etc). We mount a defense against such attacks with CAPTCHAs, `completely automatic public Turing tests to tell computers and humans apart;' these are special cases of `human interactive proofs' (HIPs), a class of security protocols allowing people easily to identify themselves over networks as members of given groups. I will review the five years of evolution of HIP R&D, highlights of the first NSF HIP workshop, and applications of HIPs now in use and on the horizon. One of the best ways to construct a CAPTCHA is to exploit the gap in ability between humans and machines in attempting to read images of text. I will describe two such reading-based CAPTCHAs, developed in collaborations between PARC and UC Berkeley:
PessimalPrint, motivated by studies of physics-based image degradations, uses images synthesized pseudo-randomly over certain ranges of words, typefaces, and image quality; and
BaffleText, motivated by the psychophysics of human reading, uses
image-masking degradations that seem to require Gestalt perception
skills.
Both CAPTCHAs have been validated by experiments on human subjects and commercial OCR machines, and both have successfully resisted attack (so far) by advanced computer-vision techniques. I'll offer proposals for an image understanding research agenda to advance further the state of the art of web security.
[Joint work with Richard Fateman, Allison Coates, Kris Popat, Monica Chew, Tom Breuel, & Mark Luk.]
Speaker: Henry Baird, Palo Alto Research Center
Sponsor: PERNET Colloquium
Time: 5:30 pm
Place: Thornton Hall 331
Thursday February 13, 2003
Topic: GIS Applications to Earthquake-induced
Landsliding
Speaker: Bijan Khazai, U.C. Berkeley Department of Civil and Environmental
Engineering
Candidate for the faculty position in engineering geology/surficial
processes
Sponsor: Geosciences Department
Time: 1:00-2:00 pm
Place: Thornton Hall 604
Thursday February 13, 2003
Topic: Molecular Mechanisms Coordinating
Cell Growth and Cell Division
Speaker: Dr. Doug Kellogg, Assistant Professor, Molecular, Cellular,
& Developmental Biology, UC Santa Cruz
Sponsor: Biology 871 Colloquium
Time: 4 to 5:15pm
Place: SCI 101
Friday February 14, 2003
Topic: Pre-Main-Sequence Dynamical
Evolution
Abstract: The general outline of the evolutionary stages through which
tenuous interstellar gas and dust passes in the process of forming an
isolated, Sun-like star has been developed from both observations and
theory over the past two decades. Nevertheless, much remains to be learned,
with one outstanding mystery being the process of formation of binary
or multiple stars. Current research results aimed at this problem will
be presented and discussed.
Speaker: Dr. Mary Barsony, Visiting Research Scientist, Jet Propulsion
Lab
Staff Scientist, Space Science Institute (Boulder, CO)
Sponsor: Physics and Astronomy Colloquium
Time: 4:00 pm
Place: Thornton Hall 411
Friday February 14, 2003
Topic: From Banach's Theorem to Rice's
Formula
Abstract: The classical result of Banach states that variation of a function
can be read from the number of its level crossings. In celebrated Rice's
formula, the statistical average of the number of level crossings by a
stochastic process in an interval is related to the mean value of the
derivative of the process. We present the connection between these two
results and provide with a generalized Rice formula for random fields.
Using this generalization we derive some statistical properties of random
sea waves.
Speaker: Krzysztof Podgorski, Indiana University. - Purdue University,
Indianapolis
Sponsor: Mathematics Department
Time: 5:00-6:00 pm
Place: Thornton Hall 211
Thursday February 20, 2003
Topic: What are the Consequences of Aneuploidy? Tools for Measuring Phenotype and Manipulating the Genome in Yeast
Speaker: Dr. Kirk Anders, Department of Genetics, Stanford University
Sponsor: Biology 871 Colloquium
Time: 4:10 PM
Place: SCI 101
Friday February 17, 2003
Topic: Analysis of Microarrays: A Dimension
Reduction Approach
Abstract: DNA microarray technology allows the measurement of thousands
of gene expression values simultaneously, providing insight into the global
gene expression patterns of cells being studied. In particular, the ability
to monitor global expression profiles using microarrays has made it possible
to investigate genome-wide objective approaches to molecular cancer classification.
In this talk, I will discuss a prediction algorithm (rule) for microarray-
based tumor classification using partial least squares dimension reduction.
Within this context, I will discuss procedures to avoid gene (variable)
selection bias when estimating the error rate of a tumor prediction rule.
Speaker: Dr. Norman Levenberg, University of Auckland and Indiana
University
Sponsor: Mathematics Department
Time: 5:00-6:00 pm
Place: Thornton Hall 211
Thursday, February 20, 2003
Topic: ASTRO: Astrophysics Scholars in Teaching, Research, and Outreach
Abstract: Teaching and public outreach have always been important elements of an academic scientist's life. Today, there is an even greater demand for scientists who are skilled--and trained--not only in carrying out top-notch research, but also in teaching effectively and in conducting outreach for the public. Here I describe training opportunities in teaching and public outreach that I hope to bring to SFSU undergraduates and graduate students. I will discuss the ways in which these activities can (a) improve the public's understanding of and participation in science, and (b) enhance graduate-students' skills and competitiveness in the academic job market.
Speaker: Dr. Keivan Stassun, Hubble Fellow in Astronomy
University of Wisconsin
Sponsor: Physics and Astronomy Colloquium
Time: 4:00 P. M. - Refreshments at 3:45 P. M.
Place: Blakeslee Room (TH 1000)
Friday February 21, 2003
Topic: Fluoroaromatic Inhibitors of Carbonic Anhydrase and Viral Neuraminidase
Speaker: Dr. Ahamindra Jain, UC Berkeley
Sponsor: Chemistry and Biochemistry Department
Time: 12:10 pm
Place: Thornton Hall 327
Friday February 21, 2003
Topic: Measuring the Masses and Angular Momenta of Newly Born Stars: Understanding the Physics of How Stars Are Made
Abstract: The most fundamental property of a star is its mass, which dictates the course of its birth, life, and death. Of only slightly lower rank is a star's angular momentum, which influences internal structure, magnetic activity, and energy transport. Our current understanding of star formation is lacking with respect to both of these fundamental stellar properties. I describe a research program that aims to measure the masses and angular momenta of very young stars, and then use these measurements to test state-of-the-art star-formation theory.
Speaker: Dr. Keivan Stassun, Hubble Fellow in Astronomy
University of Wisconsin
Sponsor: Physics and Astronomy Colloquium
Time: 4:00 P. M. - Refreshments at 3:45 P. M.
Place: Blakeslee Room (TH 1000)
Monday February 24, 2003
Topic: Direct/Inverse Guided Acoustic
Obstacle Scattering Problems
Abstract: Acoustic waves have been applied in long range detection and
non-destructive analysis for a long time. For example, the sonar system
on boats and the ultrasound equipment in medical institutes. When sound
waves bounce to an object of size much bigger than the wavelength, scattering
occurs. Measurement of the acoustic field can be used to approximate certain
properties of the scatterer. In this talk, we will give an overview of
time-harmonic acoustic scattering in a waveguide and its corresponding
inverse problem in which the shape of the scatterer is the unknown. The
mathematical formulation of both the direct and inverse guided acoustic
scattering will be presented and some analytical and numerical tools will
be introduced. Some of our recent results will also be presented in this
talk.
Speaker: Dr. Miao-jung Yvonne Ou,
Institute for Mathematics and its Applications, University of Minnesota
Sponsor: Mathematics Department
Time: 5:00-6:00 pm
Place: Thornton Hall 211
Tuesday, February 25, 2003
Topic: Floodplain Processes: High and Low Energy Systems in the Stream Power Continuum
Speaker: Dr. Joan Florsheim, University of California, Davis Geology Department and Center for Integrated Watershed Science and Management
Candidate for the faculty position in engineering geology/surficial processes
Sponsor: Geoscience Speaker Series
Time: 1-2 pm
Place: Thornton Hall 604
Wednesday February 26, 2003
Topic: Poster Day Social
Abstract: To kick off the RTC Spring Seminar Series, please join us for a potluck lunch and social gathering. RTC scientist will share the research results that they have presented as posters at local, national, and international meetings over the last year.
Sponsor: Romberg Tiburon Center Seminar Series
Time: Noon - 1 pm
Place: Bay Conference Center @ RTC 3152 Paradise Drive Tiburon, CA 94920
Directions
here or rtcinfo@sfsu.edu (415) 338-6063
Wednesday, February 26, 2003
Topic: DC-Train 4.0 Simulator and Trainer for Crisis Decision Making
Abstract: This talk presents the DC-Train 4.0 simulator and trainer for
crisis decision making in the domain of ship damage control. DC-Train
simulates a ship and the personnel on a ship, and allows a decision maker
through an immerse interface to solve problems that involve fire, smoke,
flooding, rupture and the like. The innovative feature of this project
from a reasoning standpoint is its method of knowledge representation
of the domain knowledge, which consists of Declarative Graph Modification
Operators (DGMOs) composed of G-Clauses for representing static knowledge
and a Causal Story Graph (CGG) for representing dynamic knowledge. This
method of knowledge representation supports four very important and very
diverse uses of the same knowledge. The knowledge can be inspected for
correctness by domain experts, and it can be interpreted by a program
to achieve the DC-Train expert model, the student critiquing model, and
the tutoring model. A description will be given of ongoing extensions
to DC-Train for spoken dialogue tutoring in conjunction with a Stanford-Illinois
MURI Award. The DC-Train project received an AAAI/IAAI Deployed Innovative
Application Award.
Speaker: David C. Wilkins, Beckman Institute
University of Illinois at Urbana-Champaign
Sponsor: PERNET Colloquium
Time: 5:30pm
Place: Thornton Hall 331
Thursday, February 27, 2003
Topic: A Proteomic Approach to Unraveling
Tightly Compacted Worm Sperm Chromatin
Speaker: Dr. Diana Chu, Molecular and Cell Biology Department
UC Berkeley
Sponsor: Microbiology and Cell and Molecular Biology Colloquium
Time: 4:10pm - Refreshments at 4pm
Place: SCI 101
Friday February 28, 2003
Topic: TBA
Speaker: Dr. Martin Venderlaan, Genentech
Sponsor: Chemistry and Biochemistry Department
Time: 12:10 pm
Place: Thornton Hall 327
Monday March 3, 2003
Topic: Infall and Rotation around Young Stars:
Formation and Evolution of
Protoplanetary Disks
Abstract: "Stars form when dense interstellar clouds collapse under the influence of their own gravity. The angular momentum present in the original cloud is carried inward as the star forms, and gives rise to a flattened structure that develops into a circumstellar disk. Such disks are widely held to be the progenitors of planetary systems. I will present observations of the amount and distribution of angular momentum in dense clouds, in collapsing cores around young stars, and in circumstellar disks. In particular I will address the question how angular momentum is transferred in viscous accretion disks, enabling continued infall. This is spurred by detailed observations of the young stellar object L1489 IRS, which is surrounded by an unusually large disk which shows both rotation and inflowing motions on all scales. This object poses the question: "What physical processes determine the final mass and size --- and planet-forming potential ---of circumstellar disks?"
Speaker: Dr. Michiel Hogerheijde, Steward Observatory
The University of Arizona
Sponsor: Physics and Astronomy Colloquium
Time: 4:00 P. M. - Refreshments at 3:45 P. M.
Place: Blakeslee Room (TH 1000)
Tuesday, March 4 , 2003
Topic: A Probabilistic Approach to
Spatially Distributed Landslide Hazard Modeling
Speaker: Dr. William Haneberg, Consultant
Haneberg Geoscience, Port Orchard, Washington
Sponsor: Geoscience Speaker Series
Time: 1-2 pm
Place: Thornton Hall 604
Wednesday March 5, 2003
Topic: An Analysis of the CPY2K Benchmarks on the Intel Itanium 2 Processor
Abstract: The Itanium 2 processor is the second processor in the Itanium Processor Family and provides approximately twice the performance of the original Itanium processor. While this is not unusual for a subsequent generation processor to get such a big
improvement, this is unusual when both chips are produced on the same process generation and have approximately the same die size. HP has reported that their Itanium 2 server achieves a score of 810 on SPECintbase_2000 --- higher thanany 0.18u micron processor on the SPEC website (as of July 9). To help explain how it achieves its excellent performance (810 int/1356 FP), we analyze how different compilers use the Itanium architecture features and specific characteristics of the Itanium 2 processor microarchitecture.
In the first part of talk, we will show how the Intel and HP compilers make use of Itanium architecture features to optimize application performance. We include detailed data regarding instruction set mixes, branch prediction and predication, software pipelining, control and data speculation, and the register stack engine.
The analysis provides data from both the Intel and HP Itanium-based compilers and shows that both compilers find instruction level parallelism of nearly 3 instructions per clock. The results show that predication, speculation, and the register stack combined provide substantial benefits. The results also show that independently
developed compiler technology achieves good results and that substantial value can be added based on OS policies and implementation.
In the second part of the talk, we examine detailed behavior of the Itanium 2 processor's execution resources, fetch bandwidth, and cache hierarchy to explain some of the benefits and trade-offs made during the Itanium 2 development. This analysis provides detailed breakdowns to show where time is being spent, what are the limiting factors in performance, and how the microarchitecture has been optimized for performance across a wide variety of applications (integer, floating-point, security, commercial).
All of the data was gathered on real hardware using the Itanium 2's performance monitoring hardware under HP-UX and early versions of Microsoft's 64-bit OS. [Note: this presentation was originally co-authored and presented with James McCormick at HP]
Speaker: Allan Knies, Intel COrporation
Sponsor: PERNET Colloquium
Time: 5:30 pm
Place: Thornton Hall 331
Thursday March 6, 2003
Topic: Genetic and Cell Biological Analysis of the Life Cycle of
the Fungus Ustilago maydis
Speaker: Dr. Flora Banuett, Associate Professor
Biological Sciences, CSU Long Beach
Sponsor: Biology 871 Colloquium
Time: 4:10pm - refreshments at 4pm
Place: SCI 101
Friday March 7, 2003
Topic: Elucidating the Mechanism of
Transport Vesicle Formation
Speaker: Dr. David Madden, UC Berkeley
Sponsor: Chemistry and Biochemistry Department
Time: 12:10 pm
Place: Thornton Hall 327
Friday March 7, 2003
Topic: Missing Photons that Count:
Galaxy Evolution via Absorbing Gas
Abstract: Absorption lines in quasar spectra provide an astonishing array of detailed physical information at unrivaled sensitivities and over the full range of observable redshifts. Using the "missing light", the kinematic, ionization, and chemical conditions of galactic gas can be decoded from the time of the first quasars (employed as distant light beacons whose light paths provide "core samples" of the universe). More generally, evolution of absorption lines can be exploited for inferring evolution in galactic supernovae energetics and galactic superwinds. Moreover, absorption lines provide the only unbiased source of observational data required for us to glean insights into the cosmic evolutionary epochs when galaxies transition (i) from formation/build-up due to IGM and proto-galactic clump accretion (ii) to actively reprocessing gas into stars, (iii) to eventually decoupling from the IGM to enter a final "passive evolution" stage.
Speaker: Dr. Christopher Churchill
Research Associate and Graduate Faculty Member
Pennsylvania State University
Sponsor: Physics and Astronomy Colloquium
Time: 4:00 P. M. - Refreshments at 3:45 P. M.
Place: Blakeslee Room (TH 1000)
Monday, March 10, 2003
Topic: Function and Regulation of Floral Homeotic Genes in Arabidopsis
Speaker: Dr. Rebecca Lamb, Postdoctoral Scholar, Department of Molecular, Cellular, and
Developmental Biology, Yale University
Sponsor: Biology Department
Time: 12:10pm - refreshments at noon
Place: BUS 120
Wednesday March 12, 2003
Topic: The Role of Seed Dispersal in
the Dynamics of Plants within Terrestrial Communities
Speaker: Dr. Tom Parker, San Francisco State University
Sponsor: Romberg Tiburon Center Seminar Series
Time: Noon - 1 pm
Place: Bay Conference Center @ RTC 3152 Paradise Drive Tiburon, CA 94920
Directions
here or rtcinfo@sfsu.edu (415) 338-6063
Thursday, March 13
Topic: Life and Death
in Tropical American
Neogene Oceans
Speaker: Dr. Peter D. Roopnarine, Asst. Curator
Department of Invertebrate Zoology & Geology
California Academy of Sciences
Sponsor: Geosciences Department Distinguished Speaker Series
Time: 12:30 - 1:30pm
Place: Thornton Hall 618
Thursday, March 13, 2003
Topic: Mechanisms of Morphogen Gradient Formation during Drosophila
Embryonic Development
Speaker: Dr. Felipe-AndrŽs Ram’rez-Weber, Assistant Professor Department of Biological Science, CSU Fullerton
Sponsor: Department of Biology Colloquium
Time: 4:10pm - refreshments at 4pm
Place: SCI 101
Wednesday March 26, 2003
Topic: Unraveling the Selenium story of the San Francisco/Delta Ecosystem:
What have we learned from (un)stable isotopes?
Speaker: Dr. Robin Stewart, US Geological Survey
Sponsor: Romberg Tiburon Center Seminar Series
Time: Noon - 1 pm
Place: Bay Conference Center @ RTC 3152 Paradise Drive Tiburon, CA 94920
Directions
here or rtcinfo@sfsu.edu (415) 338-6063
Wednesday March 26, 2003
Topic: Digital Library Information Appliances
Abstract: Documents created, stored, and retrieved digitally are often printed on paper to be read for the purposes of producing new documents. The cycle of electronic document "consumption" and production is often broken in the middle by printing. Our research in XLibris has examined these transitions between the digital and paper worlds. Starting with interfaces for analytic reading, we have focused on annotation, on retrieval and re-retrieval, and on shared annotation. In this talk, I will describe the interfaces and the empirical evaluations we have conducted, and will discuss the potential of this technology in digital - and in physical - libraries.
Speaker: Gene Golovchinsky, FX Palo Alto Laboratory
Sponsor: PERNET Colloquium
Time: 5:30 pm
Place: Thornton Hall 331
Thursday, March 27, 2003
Topic: Monterey Canyon: A Dynamic Submarine Conduit
Speaker: Dr. Gary Greene, Professor, Moss Landing Marine Labs
Monterey Bay Aquarium Research Institute
Sponsor: Geoscience Distinguished Speaker Series
Time: 12:30 - 1:30pm
Place: Thornton Hall 618
Thursday March 27, 2003
Topic: Developing a New Therapeutic Approach for Alzheimer's Disease
Speaker: Dr. Dora Games, Elan Pharmaceuticals, Inc.
Sponsor: Biology 871 Colloquium
Time: 4:10 PM - refreshments at 4pm
Place: SCI 101
Wednesday April 2, 2003
Topic: A Perceptually Based Audio Signal Model with Application to Audio Transformations
Abstract: Time and frequency are inherently coupled. Speedup the playback of a recording (time-domain) and the perceived pitch of the music will be higher than the original (frequency-domain). For many applications, changing time without changing frequency and vice versa is desirable. The focus of this talk will be on a perceptually relevant signal model that allows the decoupling of time and frequency. Augmenting the model parameters provides a means for a wide range of musically interesting transformations when regenerating the signal.The model assumes audio signals are composed of three basic components: sinusoids, transients, and noise. In addition to the signal processing methods to extract these parameters in a perceptually meaningful way, the history of such models and sound examples of various transformations will be presented.
Speaker: Tony Verma, Vidiator Technology
Sponsor: PERNET Colloquium
Time: 5:30 pm
Place: Thornton Hall 331
Thursday, Apr 3, 2003
Topic: Tube or not Tube: Remodeling Epithelial Tissues by Branching
morphogenesis
Speaker: Dr. Zena Werb, Professor, Department of Anatomy
UC San Francisco
Sponsor: Biology 871 Colloquium
Time: 4:10 PM - refreshments at 4pm
Place: SCI 101
Monday April 7, 2003
Topic: Imaging the Early Universe with ACBAR
Abstract: Primary anisotropies of the Cosmic Microwave Background (CMB) encode a wealth of information about the early Universe. Recent degree-scale experiments have begun to exploit the potential of the CMB as a precision probe of cosmology with encouraging results. High-resolution images of the CMB can be used to provide improved constraints on cosmological parameters and study the growth of structure in the Universe. The Arcminute Cosmology Bolometer Array Receiver (ACBAR) is a powerful new instrument designed to image the CMB with resolution of 5 arcminutes. ACBAR was deployed to the South Pole in December 2000, and has recently produced the most sensitive images of the CMB of any experiment to date. I will discuss the construction and operation of the receiver, and present the key results from the first two years of observations.
Speaker: Dr. William Holzapfel, Associate Professor of Physics
Univ. of California, Berkeley
Sponsor: Physics and Astronomy Colloquium
Time: 4:00 pm
Place: Thornton Hall 411
Tuesday April 8, 2003
Topic: SPECIAL SEMINAR: Penguins Meet Mega-Icebergs
Abstract:
Dr. Ainley was the Director of Marine Studies at the Point Reyes for
18 years and has developed a penguin research program that spans over 20 years.
Dr. Ainley is one of the world's leading authorities on penguin
biology and ecology. If you are interested in how those giant
icebergs (the size of Rhode Island) are affecting penguins and the
ecosystem in general in the Ross Sea region of Antarctica, then you
will not want to miss this talk.
Speaker: Dr. Dave Ainley
Sponsor: Romberg Tiburon Center Seminar Series
Time: Noon
Place: Administration Bldg, 1st Floor Classroom @ RTC 3152 Paradise Drive Tiburon, CA 94920
Directions
here or rtcinfo@sfsu.edu (415) 338-6063
Wednesday April 9, 2003
Topic: TBA
Speaker: Dr. Jon Burau, US Geological Survey
Sponsor: Romberg Tiburon Center Seminar Series
Time: Noon - 1 pm
Place: Bay Conference Center @ RTC 3152 Paradise Drive Tiburon, CA 94920
Directions
here or rtcinfo@sfsu.edu (415) 338-6063
Wednesday April 9, 2003
Topic: Come Hell or High Water? The Case for Floodplain Restoration in the
Central Valley
Speaker: Ted Sommer, California Dept. of Water Resources
Sponsor: Romberg Tiburon Center Seminar Series
Time: Noon - 1 pm
Place: Bay Conference Center @ RTC 3152 Paradise Drive Tiburon, CA 94920
Directions
here or rtcinfo@sfsu.edu (415) 338-6063
Wednesday April 9, 2003
Topic: The Computation of Shrek
Abstract: The talk will discuss the computational challenges and approaches of animated feature film production on the example of "Shrek". First, an overview of the feature animation production pipeline will be given. Then the rendering complexity, algorithms, and implementation will be discussed in more detail. Finally we will
talk a bit about the specific use of Linux. The talk will touch on
topics like artistic development, computer graphics, complexity,
processing power, networking, renderfarms, Linux, software
development tools, and OpenSourcing.
Speaker: Karl Johann Schmidt, PDI/DreamWorks
Sponsor: PERNET Colloquium
Time: 5:30 pm
Place: Thornton Hall 331
Thursday, April 10, 2003
Topic: Tephrachronologic Evidence for
Long-Term Displacement of the
East San Andreas Fault System in
the Northern San Francisco Bay Area
Speaker: Andre M. Sarna-Wojcicki, Head of Tephrachronology Lab
U.S.G .S. Menlo Park, CA
Sponsor: Geoscience Distinguished Speaker Series
Time: 12:30 - 1:30pm
Place: Thornton Hall 618
Thursday, Apr 10, 2003
Topic: Immunologic Control of HIV Infection Morphogenesis
Speaker: Dr. Jay Levy, Professor, Department of Medicine
and Research Associate, Cancer Research Institute, UCSF
Sponsor: Biology 871 Colloquium
Time: 4:10 PM - refreshments at 4pm
Place: SCI 101
The Sunyaev-Zel'dovich (SZ) effect is the inverse-Compton scattering of Cosmic Microwave Background (CMB) photons by the hot gas in the potential wells of galaxy clusters. Measurements of the spectrum of the SZ effect allow the peculiar velocity of a cluster, relative to the Hubble expansion, to be measured. Peculiar velocities are sensitive to the distribution of dark matter in the universe and can be used to map out the gravitational potential on large scales, and to directly measure the matter density. The SZ effect can also be used to measure the temperature of the CMB as a function of redshift, and to determine the angular diameter distance-redshift relation and thus to probe dark energy. I will review measurements of the SZ spectrum that are being made with SuZIE (the Sunyaev-Zel'dovich Infrared Experiment) and discuss future prospects in this field.
Thursday, April 17, 2003
Topic: California Tectonics:
The Laramide and Andean Orogenies
Speaker: Eldridge Moores, Professor of Geology
U.C. Davis
Sponsor: Geoscience Distinguished Speaker Series
Time: 12:30 - 1:30pm
Place: Thornton Hall 618
Thursday, April 17, 2003
Topic: Morphogenetic Potential of Muscle Progenitor Cells in Chick Embryos
Speaker: Dr. Sara Venters, Postdoctoral Scholar
Department of Anatomy, UC San Francisco
Sponsor: Biology 871 Colloquium
Time: 4:10 PM - refreshments at 4pm
Place: SCI 101
Monday April 21, 2003
Topic: Analytical Applications of Jet-REMPI
Abstract: Jet-REMPI is an approach that combines a supersonic jet inlet (for cooling), a resonant laser photoionization scheme, and a time of flight mass spectrometer. A sample compound can be identified by both its rovibrational spectral signature and its mass, providing high selectivity. Additionally the photoionization scheme is orders of magnitude more efficient than conventional electron beam ionization, so that the method is highly sensitive. Jet-REMPI has been used for 30 years for spectroscopic and molecular dynamics research, but only recently has it been developed as an analytical tool. The excellent combination of selectivity and sensitivity make it very useful for this purpose. At SRI, we have concentrated on the use of Jet-REMPI in trace species analysis. Past and current applications include measurement of: dioxins, explosives, hazardous air pollutants, toxics in fuel exhaust, a cancer drug, and compounds in the breath for disease diagnosis.
Speaker: Dr. David R. Crosley, Molecular Physics Laboratory
SRI International, Menlo Park, California
Sponsor: Physics and Astronomy Colloquium
Time: 4:00 pm
Place: Thornton Hall 411
Wednesday April 23, 2003
Topic: Who Overgrazes What, Where, and Why: What benthic grazers tell us about how the ecosystem works
Speaker: Jan Thompson, US Geological Survey
Sponsor: Romberg Tiburon Center Seminar Series
Time: Noon - 1 pm
Place: Bay Conference Center @ RTC 3152 Paradise Drive Tiburon, CA 94920
Directions
here or rtcinfo@sfsu.edu (415) 338-6063
Thursday, April 24, 2003
Topic: Fragile X: Two Disorders, One Gene
Speaker: Dr. Randi Hagerman, Tsakopoulos-Vismara Professor of Pediatrics and Medical Director, MIND Institute, UC Davis
Sponsor: Biology 871 Colloquium
Time: 4:10 PM - refreshments at 4pm
Place: SCI 101
Thursday, April 24, 2003
Topic: Disarticulating Faults and Crustal Strain Hardening in Southern Death Valley
Speaker: Matt McMackin, Professor of Geology
San Jose State University
Sponsor: Geoscience Distinguished Speaker Series
Time: 12:30 - 1:30pm
Place: Thornton Hall 618
Monday April 28, 2003
Topic: Coronae of the Sun and Stars
Abstract: Observations of X-ray and extreme ultraviolet emission from space are crucial in our understanding of the structure, evolution, and variability of coronae on the Sun and "cool" stars. Over the past two decades, imaging telescopes on Yohkoh, SOHO, and TRACE have provided dramatic evidence for the dynamic nature of solar activity. In parallel, our understanding of stellar magnetic activity has rapidly increased as a result of imaging and spectroscopic observations of single stars and stellar clusters from Einstein, ROSAT, EUVE, and more recently Chandra and XMM. In this talk, I will discuss some key observations which have shaped our current picture of solar and stellar coronae; important questions which are still unresolved; and, if time permits, how recent technological advances will drive future space missions in this area of astrophysical research.
Speaker: Dr. Robert Stern
Lockheed Martin Solar and Astrophysics Lab. Palo Alto, CA
Sponsor: Physics and Astronomy Colloquium
Time: 4:00 pm
Place: Thornton Hall 411
Thursday, May 1, 2003
Topic: Swimming in the Stomach: How Helicobacter pylori uses Motility During Infection
Speaker: Dr. Karen Ottemann, Assistant Professor
Department of Environmental Toxicology, UC Santa Cruz
Sponsor: Biology 871 Colloquium
Time: 4:10 PM - refreshments at 4pm
Place: SCI 101
Friday, May 2, 2003
Topic: Special Colloquium
Laboratory Studies Relevant to the Terrestrial and Planetary Atmospheres
Abstract: In the atmospheres of the Earth and Venus, oxygen atoms are generated by the photodissociation of O2 and CO2, respectively.Ê The three-body recombination of these oxygen atoms results in the formation of a multitude of electronically and internally excited states of O2.ÊOn Earth, emission from these electronic states exhibits a peak at approximately 100 km and is part of the naturally occurring chemiluminescence of the atmosphere called nightglow.ÊSince all the low-lying states of molecular oxygen are metastable, their radiative lifetimes are long enough that, even at very high altitudes, collisions play a dominant role in determining the fate of these excited states.ÊAn understanding of the energy transfer rate constants and pathways is critical for elucidating the details of these atmospherically important phenomena and for developing the ability to model them. Our laboratory has developed experimental methods to study collisional processes involving electronically excited O2 molecules under temperature conditions relevant to the upper atmosphere.
Dr. Konstantinos S. Kalogerakis, Research Chemical Physicist
Molecular Physics Laboratory, SRI International, Menlo Park, CA
Sponsor: Physics and Astronomy Colloquium
Time: 4:00 pm
Place: Thornton Hall 411
Monday May 5, 2003
Topic: Evidence from Type Ia Supernovae for an Accelerating Universe and Dark Energy
Abstract: The measured distances of type Ia (hydrogen-deficient) supernovae as a function of redshift (z) have shown that the expansion of the Universe is currently accelerating, probably due to the presence of repulsive dark energy (X) such as Einstein's cosmological constant (Lambda). Combining our data with existing measurements of the cosmic microwave background radiation and with the results of large-scale structure surveys, we find a best fit for Omega_M and Omega_X of about 0.3 and 0.7, respectively. Other studies (e.g., masses of clusters of galaxies) suggest that the matter density Omega_M = 0.3. The sum of the densities, 1.0, agrees with the value predicted by most inflationary models for the early Universe: the Universe is flat on large scales.ÊA number of possible systematic effects (dust, supernova evolution) thus far don't seem to eliminate the need for Omega_X > 0. Most recently, analyses of supernovae at z = 1.0-1.7 provide further support for acceleration. We are now in the process of measuring 200 supernovae with z = 0.2-0.8, to determine the equation of state of the dark energy,
w_X = P/(rho c^2).
Dr. Alex Filippenko, Professor of Astronomy
University of California, Berkeley
Sponsor: Physics and Astronomy Colloquium
Time: 4:00 pm
Place: Thornton Hall 411
Monday May 12, 2003
Topic: The Dark Side of the Universe
Abstract: Most of the universe is in the form of dark matter and dark
energy. I will describe both recent progress and unsolved mysteries in understanding these intriguing components.
Speaker: Dr. Chung-Pei Ma, Associate Professor of Astronomy
University of California, Berkeley
Sponsor: Physics and Astronomy Colloquium
Time: 4:00 pm
Place: Thornton Hall 411
Thursday, May 15, 2003
Topic: Regulation of Chromosome Replication inS. cerevisiae
Speaker: Dr. Oscar Aparicio, Assistant Professor of Molecular Biology Department of Biology, and Norris Comprehensive Cancer Center School of Medicine, University of Southern California
Sponsor: Biology 871 Colloquium
Time: 4:10 PM - refreshments at 4pm
Place: SCI 101
Thursday, May 22, 2003
Topic: RNA Interference: A New Frontier in Vaccinology
Speaker: Dr. Omar Bagasra, Director South Carolina Biotechnology Center
Sponsor: Biology 871 Colloquium
Time: 4:10 PM - refreshments at 4pm
Place: SCI 101
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